About Subdive

Subdive

Subdive a web system to store and visualize genomic variation data.

Subdive Demonstration

Visualizing Big Variation Data

The progress of high throughput sequencing technologies brings changes to life science studies. Increasing depth enables detecting more and more variations, and it makes data analysis more difficult. We think heuristic approach by wet researchers is as important as statistical approach by bioinformaticians. Because NGS is still developing technology, the quality is highly arguable, and interpretation is hard. The analysis can't be straightforward nor logical like bioinformaticians tend to think. You need to carefully watch the data to find something, and think why it's so. The trial and error procedure is necessary.

Subdive provides a means of exploratory analysis of such a big variation data for wet people. First, you extract samples by attributes or ones having variations on specific genes or a genomic region. Second, extract variations by type or location to visualize. Now you see numbers of variations among populations on the chart. It's possible to visualize variants on all genes or specific genes.

If you're interested in variants on a specific gene, you can visualize them on gene browser. In this view, you can extract variants which are common in selected populations but rare in other populations.

Please contact us for a demonstration. We can issue a temporary account for your testing.

Technical Information

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3 Plans of Subdive

Shared Plan Cloud Plan In-House Plan
Server *1 Shared Cloud
Dedicated Cloud
In-House Server
User Account *2 Administrator
Curator
Member
Guest
Security

*1 Server

Shared Cloud
A shared server on cloud which is accessible to everyone. But we can add password-protected private projects on it, too.
Dedicated Cloud
We setup a dedicated instance on Amazon Web Services.
In-House Server
We setup an instance on a server at your site.

*2 User Account

Administrator
The administrator can add public data sets, and can create groups by inviting curators.
Curator
Curators can add group-private data sets and invite members to their own groups.
Member
Invited members can browse group-private data sets.
Guest
All visitors can browse public data sets without sign-in.

Price List

USD EUR JPY

Shared Plan

Upload A Data Set to The Subdive Shared Server:

To visualize your own variation data set on Subdive, please order this service to have us import it as a private project. Private projects aren't visible to other users or guests and you need to sign-in to browse them.

We accept VCF file for this service. If you have raw data or any other format files, we can convert them at a certain fee which depends on the format. Please contact us for estimating.

Price
Creating Projects 100 USD / Sample

Volume Discount is available if you have more than 4 samples.

Volume Discount Rate
Sample 5-9th 10-14th 15-19th 20th-
Discount Rate 20% 30% 40% 50%

Cloud Plan

We setup a dedicated instance of Subdive on the cloud.

1st year Following years
Lincense 6,000 USD 5,400 USD
Initial fee 1,000 USD 0
Hosting fee 2,000 USD 2,000 USD
Total 9,000 USD 7,400 USD

In-House Plan

We setup an instance of Subdive on a server at your site. It is possible to use without connecting to the internet.

1st year Following years
License 12,000 USD 10,800 USD
Initial fee 5,000 USD 0
Hardware Install by Yourself 0
On-site support Travel Expense *3 Travel Expense
Total 17,000 USD 10,800 USD

Shared Plan

Upload A Data Set to The Subdive Shared Server:

To visualize your own variation data set on Subdive, please order this service to have us import it as a private project. Private projects aren't visible to other users or guests and you need to sign-in to browse them.

We accept VCF file for this service. If you have raw data or any other format files, we can convert them at a certain fee which depends on the format. Please contact us for estimating.

Price
Creating Projects 100 EUR / Sample

Volume Discount is available if you have more than 4 samples.

Volume Discount Rate
Sample 5-9th 10-14th 15-19th 20th-
Discount Rate 20% 30% 40% 50%

Cloud Plan

We setup a dedicated instance of Subdive on the cloud.

1st year Following years
Lincense 6,000 EUR 5,400 EUR
Initial fee 1,000 EUR 0
Hosting fee 2,000 EUR 2,000 EUR
Total 9,000 EUR 7,400 EUR

In-House Plan

We setup an instance of Subdive on a server at your site. It is possible to use without connecting to the internet.

1st year Following years
License 12,000 EUR 10,800 EUR
Initial fee 5,000 EUR 0
Hardware Install by Yourself 0
On-site support Travel Expense *3 Travel Expense
Total 17,000 EUR 10,800 EUR

Shared Plan

Upload A Data Set to The Subdive Shared Server:

To visualize your own variation data set on Subdive, please order this service to have us import it as a private project. Private projects aren't visible to other users or guests and you need to sign-in to browse them.

We accept VCF file for this service. If you have raw data or any other format files, we can convert them at a certain fee which depends on the format. Please contact us for estimating.

Price
Creating Projects 10,000 JPY / Sample

Volume Discount is available if you have more than 4 samples.

Volume Discount Rate
Sample 5-9th 10-14th 15-19th 20th-
Discount Rate 20% 30% 40% 50%

Cloud Plan

We setup a dedicated instance of Subdive on the cloud.

1st year Following years
Lincense 600,000 JPY 540,000 JPY
Initial fee 100,000 JPY 0
Hosting fee 200,000 JPY 200,000 JPY
Total 900,000 JPY 740,000 JPY

In-House Plan

We setup an instance of Subdive on a server at your site. It is possible to use without connecting to the internet.

1st year Following years
License 1,200,000 JPY 1,080,000 JPY
Initial fee 500,000 JPY 0
Hardware Install by Yourself 0
On-site support Travel Expense *3 Travel Expense
Total 1,700,000 JPY 1,080,000 JPY

*3 Travel expenses will be determined on the contract.

Prices in USD or EUR will change according to exchange rate without previous announcement.

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