If Subio Platform doesn't recognize paired-end samples correctly, please name the FASTQ files like below.
XXX_1.fastq.gz
XXX_2.fastq.gz
YYY_1.fastq.gz
YYY_2.fastq.gz
ZZZ_1.fastq.gz
ZZZ_2.fastq.gz
XXX, YYY, ZZZ are sample names, and _1 and _2 represent pairs.