Not for leaving all the analysis tasks,
but for fully preparing
for your biological interpretation.
The data analysis workflow is composed of not-so-important outsourceable parts and crucial parts that you have to take care of by yourself. Novice analysts often don't care what will come later, and they like to do it from the beginning sequentially. Consequently, when they come to the crucial part, they are already exhausted. As a result, they cannot fully use the data. We think they tend to fail in prioritizing tasks due to the lack of an entire vision.
By the way, if you ask data analysis to somebody but Subio, you will likely to receive lists of differentially expressed genes in Excel, and some chart images in PDF. They are not final results, but a starting-point of the enormous trials and errors for extracting biological meaning or insights. But the file formats are too simple for doing such a massive task, and they misunderstand them as final results. You no way make full use of the data.
So, we take charge of the outsourceable parts and then deliver an SSA(Subio Series Archive) file as a result of this service. You import it into the Subio Platform to browse the whole process from the raw data. And you can add your approach to it because it is not the final result, as we mentioned above. What we can do is only preparing so that you can smoothly take over the analysis.
We hold a web meeting to show the characteristics, limitations, and problems, if we see, of the raw data with Subio Platform's visual aid. And also we explain how we processed it, and what statistical methods were applied step by step.
You can ask for free online support anytime you need it. We know that it is useless to make you overwhelmed by too much information. So we think having many small meetings is adequate for you to digest. Please don't hesitate to ask.
This service covers such generous aftercare. Are there any reasons not to use it?
Book an online support session.
The delivered SSA file includes results of statistical analysis though; you can fiddle more by yourself with plug-ins.
Plug-in set users can order Data Analysis Service and Online Training anytime at a 40% discounted rate for one year from the purchase date. You can use the advantage not only for your data, but also publicly available data sets like GEO or TCGA. So let us offer you order this service and plug-ins together.
We charge not per sample, but per dataset. For example, we charge per Dataset (GDS) or Series (GSE) of Gene Expression Omnibus. If a dataset contains less than 100 samples, we count it as one Small Dataset. If the number exceeds 100, we count it as one Large Dataset. Even if the number of samples is less than 100, we apply Large Dataset if the data rows are more than 100,000.
By the way, let me talk about data types for this service. We basically can analyze any data which is composed of IDs and corresponding measurement values.
For example;
| Price | Special Price for Plug-in Set User *3 |
|
|---|---|---|
| Small Dataset *1 *2 | 198 USD | 119 USD |
| Large Dataset | 498 USD | 299 USD |
| Price | Special Price for Plug-in Set User *3 |
|
|---|---|---|
| Small Dataset *1 *2 | 198 EUR | 119 EUR |
| Large Dataset | 498 EUR | 299 EUR |
| Price | Special Price for Plug-in Set User *3 |
|
|---|---|---|
| Small Dataset *1 *2 | 20,000 JPY | 12,000 JPY |
| Large Dataset | 50,000 JPY | 30,000 JPY |
| Price | |
|---|---|
| PDF Report Option *4 | 200 USD |
| Express Option *5 | 50％ of the total amount |
| Price | |
|---|---|
| PDF Report Option *4 | 200 EUR |
| Express Option *5 | 50％ of the total amount |
| Price | |
|---|---|
| PDF Report Option *4 | 20,000 JPY |
| Express Option *5 | 50％ of the total amount |
Small Dataset: <100,000 rows and <100 samples. Datasets exceeding the criteria are counted as Large Dataset.
* For a year from purchasing Plug-in Set.
We accept FASTQ files as input with an additional charge, which depends on the sum of sizes of the FASTQ files, and the formula is one Small Dataset /5GB. We take only one side of FASTQ files for paired-end samples.
* For a year from purchasing Plug-in Set.
We explain about the data and analysis steps in a web meeting. But if you want to keep the information as a file, you can add this option.
We usually deliver the results within two weeks, but the delivery date is not guaranteed. If you need to specify the delivery date, please order "express option" as well. We will deliver the results by 16:00 of the specified date.
Small Dataset: <100,000 rows and <100 samples. Datasets exceeding the criteria are counted as Large Dataset.
* For a year from purchasing Plug-in Set.
We accept FASTQ files as input with an additional charge, which depends on the sum of sizes of the FASTQ files, and the formula is one Small Dataset /5GB. We take only one side of FASTQ files for paired-end samples.
* For a year from purchasing Plug-in Set.
We explain about the data and analysis steps in a web meeting. But if you want to keep the information as a file, you can add this option.
We usually deliver the results within two weeks, but the delivery date is not guaranteed. If you need to specify the delivery date, please order "express option" as well. We will deliver the results by 16:00 of the specified date.
Small Dataset: <100,000 rows and <100 samples. Datasets exceeding the criteria are counted as Large Dataset.
* For a year from purchasing Plug-in Set.
We accept FASTQ files as input with an additional charge, which depends on the sum of sizes of the FASTQ files, and the formula is one Small Dataset /5GB. We take only one side of FASTQ files for paired-end samples.
* For a year from purchasing Plug-in Set.
We explain about the data and analysis steps in a web meeting. But if you want to keep the information as a file, you can add this option.
We usually deliver the results within two weeks, but the delivery date is not guaranteed. If you need to specify the delivery date, please order "express option" as well. We will deliver the results by 16:00 of the specified date.
We need the annotation file if you use custom microarrays.
We do not need it for RNA-Seq data or catalog microarrays like Agilent or Affymetrix. But still, you can send a file if you want us to add.
We accept following formats as experimental data files.
If you're not sure, please let us know what kind of files you have. Sending screenshots of directories helps a lot. Or you can request online support.
Please prepare a table of file names and experimental parameters.
Additionally, you can send us documents about experimental design and purpose. If you tell us what pattern you are interested in, we apply the best way for that.
Please make a zip file of all the files you prepare for step 1 - 3, and send it from Contact Us page.
We return a SSA or SOA file as a result. You can see the contents by importing it into Subio Platform. Please select "Import Archive..." under Platform menu to open the file.
The service includes a web meeting to explain the characteristics of the data and analysis steps. You can ask alternative or additional analysis within the meeting. In such cases, we will re-analyze the data and send the result again. We ask you to order another service for further requests.
Our technical staff will visit you and provide a data analysis service at your site. The total amount of the fee is a sum of the Service Charge and Travel Charge. You can order as many days if we can adjust the schedule.
The price is flat regardless of the data size, but the maximum daily service hours is 6 hours. And this is advantageous if you need intensive discussion. Also, we can work on the data containing confidential and personal information which cannot be brought outside.
| Price | Special Price for Plug-in Set User |
|
|---|---|---|
| On-site Service day 1 | 1,000 USD | 700 USD |
| From day 2 /day | 500 USD | 350 USD |
| Price | Special Price for Plug-in Set User |
|
|---|---|---|
| On-site Service day 1 | 1,000 EUR | 700 EUR |
| From day 2 /day | 500 EUR | 350 EUR |
| Price | Special Price for Plug-in Set User |
|
|---|---|---|
| On-site Service day 1 | 100,000 JPY | 70,000 JPY |
| From day 2 /day | 50,000 JPY | 35,000 JPY |