Comparing mutations between the control and case groups for filtering.
This tool accepts annotated VCF files. So run the Annotate VCF tool first.
The input VCF files might be of two groups, which are case and control. This tool aggregates variations so that you can easily extract candidates of target by enabling filtering mutation type or the frequency in the control or case groups.
There are two modes of execution. The “Count by Variant” mode aggregates each variation. On the other hand, the “Count by Location” mode ignores what kind of mutation occurs, but minds only location.