Calculate edgeR & DESeq2 P-values Using ChatGPT-Generated R Scripts | Subio Platform Workflow
In this video, you will learn how to calculate P-values using edgeR and DESeq2 with R scripts generated by ChatGPT. This approach can also be applied to other R libraries and Bioconductor tools.
Instead of manually writing complex code, you can define your analysis requirements in plain text, let ChatGPT generate the script, and execute it in R. Even when errors occur, ChatGPT can help identify and fix them, making the workflow efficient and accessible.
This video demonstrates a practical workflow:
- Export Gene Counts data from Subio Platform
- Prepare a clean datasheet for analysis
- Generate an R script using ChatGPT
- Run edgeR and DESeq2
- Fix errors with ChatGPT
- Import results back into Subio Platform
- Compare P-values visually
This approach allows you to focus on interpreting your data rather than struggling with coding.
This analysis is part of a full RNA-Seq tutorial.
→ View the complete guide here