FASTQ File Processing Service

You need to use many tools or algorithms to process FASTQ files, which are generated by high throughput sequencing systems. But it is only converting read sequences to biological data formats. Don't you think you spend too much time to learn those software operations? We provide this service for researchers who don't want to waste time on merely data handling, but spend more time on biological interpretation and discovery.

Generally speaking, there are technology dependent layer and independent layer. If you spend time on learning skills of the "dependent" layer, they will be outdated sooner or later. But skills of the "independent" layer will never fade. So it is more efficient to learn skills of "independent" layer first, and then "dependent" layer if you want. But many students seem doing in a opposite way, and disdaining the most important part.

Technology dependent and independent layers

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mRNA-Seq Data Processing on a reference genome

We provide FASTQ file processing as a paid service. We use fastp for QC and filtering, HISAT2 for mapping. You can choose a quantification tool from Cufflinks, HTSeq, and StringTie.

Reference genome data are usually available. However, if we need to create one for your data, we add Customization Charge for it.

The service charge is same for paired-end and single-end read. However, we add Server Charge if the total size of FASTQ gz files exceeds 20GB.

75 USD /Sample On preset reference genome 75 USD /Sample + Customization Charge On custom reference genome FASTQ files A Text File (Counts/FPKM)

Other Applications

Please contact us for the following processing.

  • mRNA-Seq (De Novo Assembly)
  • ChIP-Seq
  • Methyl-Seq
  • Exome Variation Calling
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