RNA-Seq Data Analysis Support Service

To learn "free" tools

or to buy commercial software.

Actually, both cost high.

You might have attended a course for RNA-Seq or microarray data analysis. Even though you could follow the textbook and completed the tasks with the demo data sets, it doesn't mean you can do it by yourself. When you start doing it with your files, unexpected errors disturb you. Can you resolve them all?

We provide two types of services so that you can choose the right way.
These are cheaper, faster, and easier solution
than buying commercial software or attending technical courses.

RNA-Seq Data Analysis

If you do not have to process a lot of FASTQ files regularly, it is not reasonable to buy software/hardware and to spend time on learning the operation.

If so, please send us FASTQ files to let us convert them into gene expression levels (count/FPKM/TPM) data for you. The subsequent gene expression data analysis from RNA-Seq is trickier than microarrays'. So we also support the following part with Data Analysis Service.

Price
RNA-Seq Data Analysis *1 *2 75 USD / Sample
Cloud Server Charge *3 *4 200 USD
  • *1 The price is same for both single-end and paired-end reads.
  • *2 We use fastp for QC and filtering, HISAT2 for mapping. And you can choose quantification tools from Cufflinks, HTSeq, and StringTie.
  • *3 Reference genome data are usually available. However, if we need to create one for your data, we add Cloud Server Charge.
  • *4 We add Cloud Server Charge if the total size of FASTQ gz files exceeds 20GB.
Price
RNA-Seq Data Analysis *1 *2 75 EUR / Sample
Cloud Server Charge *3 *4 200 EUR
  • *1 The price is same for both single-end and paired-end reads.
  • *2 We use fastp for QC and filtering, HISAT2 for mapping. And you can choose quantification tools from Cufflinks, HTSeq, and StringTie.
  • *3 Reference genome data are usually available. However, if we need to create one for your data, we add Cloud Server Charge.
  • *4 We add Cloud Server Charge if the total size of FASTQ gz files exceeds 20GB.
Price
RNA-Seq Data Analysis *1 *2 7,500 JPY / Sample
Cloud Server Charge *3 *4 20,000 JPY
  • *1 The price is same for both single-end and paired-end reads.
  • *2 We use fastp for QC and filtering, HISAT2 for mapping. And you can choose quantification tools from Cufflinks, HTSeq, and StringTie.
  • *3 Reference genome data are usually available. However, if we need to create one for your data, we add Cloud Server Charge.
  • *4 We add Cloud Server Charge if the total size of FASTQ gz files exceeds 20GB.

RNA-Seq Analysis Pipeline Setup

If you have to process a lot of FASTQ files regularly and you have a capable computer, it is reasonable to work the process on it.

We help to establish a pipeline composed of freeware by email and web meeting. This service covers setup and troubleshooting to make the execution completed. Save your time by having you learn the operation minimum, and by avoiding annoying execution errors. Once the pipeline works, you can continuously process upcoming FASTQ files as well.

This is cheaper, faster, and easier solution than buying commercial software or attending technical courses. We also support the subsequent gene expression data analysis with Data Analysis Service.

Price
RNA-Seq Analysis Pipeline Setup *5 *6 300 USD
Repair *7 100 USD / Hour
  • *5 Prepare a computer at your site or cloud.
  • *6 This service covers one data set, including advice on selecting machine, tools installation and setup, operation guidance, execution support, resolving errors, generating results (count/FPKM/TPM).
  • *7 Customers who established an environment under our support can ask for repair. System updates, format changes or others can bring problems to the pipeline.
Price
RNA-Seq Analysis Pipeline Setup *5 *6 300 EUR
Repair *7 100 EUR / Hour
  • *5 Prepare a computer at your site or cloud.
  • *6 This service covers one data set, including advice on selecting machine, tools installation and setup, operation guidance, execution support, resolving errors, generating results (count/FPKM/TPM).
  • *7 Customers who established an environment under our support can ask for repair. System updates, format changes or others can bring problems to the pipeline.
Price
RNA-Seq Analysis Pipeline Setup *5 *6 30,000 JPY
Repair *7 10,000 JPY / Hour
  • *5 Prepare a computer at your site or cloud.
  • *6 This service covers one data set, including advice on selecting machine, tools installation and setup, operation guidance, execution support, resolving errors, generating results (count/FPKM/TPM).
  • *7 Customers who established an environment under our support can ask for repair. System updates, format changes or others can bring problems to the pipeline.
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